bioinfo.lifl.fr :: Bioinformatics Software Server
Software
- mreps: Algorithm for finding Maximal Tandem Repeats
- YASS: Homology search tool, pairwise local alignment of genomic sequences
- Magnolia: Classification and multiple alignment of protein-coding and noncoding RNA sequences by comparative analyse
- Protein coding sequences and proteins
- Path: Protein back-translation and alignment
- Protea: Prediction of coding sequences by comparative analysis
- ReBLOSUM: Rectangular BLOSUM matrices to compare amino acids groups
- RNA tools
- CARNAC: Prediction of secondary structures for a family of homologous sequences
- RNAfamily: Java viewer for RNA secondary structures
- GARDENIA: Comparison and alignment of RNA secondary structures
- CG-seq: Prediction of noncoding RNAs in a genomic sequence by comparative analysis and multispecies comparison
- REGLISS: Construction of all locally optimal secondary structures for a single sequence
- TFM - Transcription Factor Matrices
- TFM-Explorer: Advanced analysis of regulatory regions in Human and Mouse genomes
- TFM-Scan: Very fast localisation of matrix motifs
- TFM-Pvalue: Efficient and accurate P-value computation
- Norine: Resource for nonribosomal peptides
- HUGO: Detection of uber-operons from a set of annotated genomes
- TD (Transformation Distance): Segment-based dissimilarity mesure between two DNA sequences
Data set
