TFM is a software suite from the Bonsai bioinformatics group for identifying and analyzing transcription factor binding sites in DNA sequences.
- TFM-Explorer is a tool for analyzing regulatory regions of eukaryotic genomes using comparative genomics and local over-representation
- TFM-Scan is a tool for locating transcription factor binding sites using Position Weight Matrices
- TFM-Pvalue is a tool for computing the P-value associated to a Position Weight Matrix with a fast and accurate algorithm
- TFM-CUDA provides parallel implementations of some features of TFM-Scan and TFM-Pvalue for NVIDIA GPUs