The RNA tools offer a series of bioinformatics program specifically designed for the analysis of structural RNA: secondary structure inference, alignment, annotation.
Predicts the consensus secondary structure for a set of homologous, unaligned RNA sequences. Very fast and accurate.
Fast and easy identification of microRNAS in plant genomes. Works with both small RNA sequencing data and full genomic sequences.
Comparison and multiple alignment of RNA sequences. The algorithm takes into account both the primary structure and the secondary structure to build a good alignment.
Annotation platform for noncoding RNAs
This tools builds all locally optimal secondary structures of an RNA sequence, which provide a useful insight into the folding landscape of the molecule.
It is a software pipeline to identify noncoding RNA genes in genomic sequences by comparative analysis and multispecies comparison.