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syringopeptin 25A


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  • Norine ID: NOR00352
  • DOI: 10.26097/nor00352
  • Family: syringopeptin
  • Synonym(s): syringopeptin 25A;
  • Activity: antimicrobial, toxin
  • Class: lipopeptide
  • Formula: C113H183N27O30
  • Monoisotopic mass: 2398.3624176509998 g/mol
  • Source: norine
  • Contributor (creation): Norine Team [CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France]
  • Entry information:
  • Type: partial cyclic
  • Number of monomers: 26
  • Smiles: CCCCCCCC(CC(=N/C(=C\C)/C(=O)N1CCC[C@H]1C(=N[C@@H](C(C)C)C(=N[C@@H](C)C(=N[C@@H](C)C(=N[C@@H](C(C)C)C(=N[C@@H](CC(C)C)C(=N[C@@H](C)C(=N[C@@H](C)C(=N/C(=C\C)/C(=N[C@@H](C(C)C)C(=N/C(=C\C)/C(=N[C@@H](C)C(=N[C@@H](C(C)C)C(=N[C@@H](C)C(=N[C@@H](C)C(=N/C(=C\C)/C(=N[C@H]2C(OC(=O)[C@@H](N=C([C@@H](N=C([C@@H](N=C([C@@H](N=C([C@@H](N=C([C@@H](N=C([C@@H](N=C2O)CO)O)C)O)C(C)C)O)C)O)CCN)O)CCN)O)CC3=CC=C(C=C3)O)C)O)O)O)O)O)O)O)O)O)O)O)O)O)O)O)O)O)O

  • Graph inference:



  • Monomeric composition :
    1
    C10:0-OH(3)
    2
    dhAbu
    3
    D-Pro
    4
    D-Val
    5
    Ala
    6
    D-Ala
    7
    Val
    8
    D-Leu
    9
    D-Ala
    10
    D-Ala
    11
    dhAbu
    12
    D-Val
    13
    dhAbu
    14
    D-Ala
    15
    D-Val
    16
    D-Ala
    17
    D-Ala
    18
    dhAbu
    19
    D-aThr
    20
    D-Ser
    21
    D-Ala
    22
    Val
    23
    Ala
    24
    Dab
    25
    D-Dab
    26
    Tyr
  • Graph representation: C10:0-OH(3),dhAbu,D-Pro,D-Val,Ala,D-Ala,Val,D-Leu,D-Ala,D-Ala,dhAbu,D-Val,dhAbu,D-Ala,D-Val,D-Ala,D-Ala,dhAbu,D-aThr,D-Ser,D-Ala,Val,Ala,Dab,D-Dab,Tyr @1 @0,2 @1,3 @2,4 @3,5 @4,6 @5,7 @6,8 @7,9 @8,10 @9,11 @10,12 @11,13 @12,14 @13,15 @14,16 @15,17 @16,18 @17,19,25 @18,20 @19,21 @20,22 @21,23 @22,24 @23,25 @18,24

  • Atomic structure:
  • Chemical structure
    rBAN vizualisation:
  • Pseudomonas syringae pv. syringae
  • gram: negative
  • taxid: 321 (view NCBI taxonomy browser)

  • Pseudomonas syringae pv. atrofaciens
  • gram: negative
  • taxid: 192087 (view NCBI taxonomy browser)

  • Links between organisms producing the syringopeptin 25A: Pseudomonas syringae pv. syringae, Pseudomonas syringae pv. atrofaciens
  • The phytotoxic lipodepsipeptide syringopeptin 25A from Pseudomonas syringae pv syringae forms ion channels in sugar beet vacuoles
    Dalla Serra M, Carpaneto A, Menestrina G, Fogliano V, Gambale F, The Journal of membrane biology , 2002, Aug 1,188(3):237-48.
    DOI: 10.1007/s00232-001-0187-x
    pubMed: 12181614


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