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pseudophomin A


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  • Norine ID: NOR00338
  • DOI: 10.26097/nor00338
  • Family: viscosin
  • Synonym(s): pseudophomin A;
  • Activity: surfactant, antibiotic
  • Class: lipopeptide
  • Formula: C55H97N9O16
  • Monoisotopic mass: 1139.7053281009998 g/mol
  • Comment: Pseudophomin A is a diastereoisomer of massetolide A.
  • Source: norine
  • Contributor (creation): Norine Team [CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France]
  • Entry information:
    • status: curated
    • last modification date: 2018-12-01 by Emma Ricart Altimiras [Swiss Institute of Bioinformatics, SIB]
    • view all entry history
  • Type: partial cyclic
  • Number of monomers: 10
  • Smiles: CCCCCCC[C@H](CC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](CCC(=O)O)C(=O)N[C@@H]1[C@H](OC(=O)[C@@H](NC(=O)[C@H](NC(=O)[C@@H](NC(=O)[C@H](NC(=O)[C@H](NC(=O)[C@H](NC1=O)[C@H](C)CC)CC(C)C)CO)CC(C)C)CO)[C@@H](C)CC)C)O

  • Graph inference:



  • Monomeric composition :
    1
    C10:0-OH(3)
    2
    Leu
    3
    D-Glu
    4
    D-aThr
    5
    D-Ile
    6
    D-Leu
    7
    D-Ser
    8
    Leu
    9
    D-Ser
    10
    Ile
  • Graph representation: C10:0-OH(3),Leu,D-Glu,D-aThr,D-Ile,D-Leu,D-Ser,Leu,D-Ser,Ile @1 @0,2 @1,3 @2,4,9 @3,5 @4,6 @5,7 @6,8 @7,9 @3,8

  • Atomic structure:
  • Chemical structure
    rBAN vizualisation:
  • Pseudomonas fluorescens
  • gram: negative
  • taxid: 136843 (view NCBI taxonomy browser)

  • Links between organisms producing the pseudophomin A: Pseudomonas fluorescens
  • Pseudophomins A and B, a class of cyclic lipodepsipeptides isolated from a Pseudomonas species
    Pedras MS, Quail JW, Ismail N, Boyetchko SM, Acta crystallographica. Section C, Crystal structure communications , 2002, May,58(Pt 5):o268-71. Epub 2002 Apr 11.
    DOI: 10.1107/s0108270102004432
    pubMed: 11983987
  • Structure, chemistry, and biological activity of pseudophomins A and B, new cyclic lipodepsipeptides isolated from the biocontrol bacterium Pseudomonas fluorescens
    Pedras MS, Quail JW, Ismail N, Boyetchko SM, Phytochemistry , 2003, Apr,62(7):1105-14.
    DOI: 10.1016/s0031-9422(02)00617-9
    pubMed: 12591264


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