The BONSAI research group provides a wide range of bioinformatics software dedicated to biological sequence analysis. Program tools are available for download and/or through user-friendly web interfaces.
Oncohematology
Marker identification for patient follow-up and stratification in blood cancers.
Gene and genome annotations
Collection of tools for homology search, transcription factor binding sites, non-coding RNAs, proteins and Tn-seq.
k-mers and large scale indexing
Ressource frugal data structures for indexing and querying collections of samples or genomes.
Metagenomics
Targeted analysis of metagenomic and metatranscriptomic data to sort out the functional and phylogenetic composition of complex microbial communities.
Transcriptomics
Methods for discovery, confirmation and expression of RNA variants (splicing, SNPs, mutations) in a single or several samples.
Long reads
Methods for correction and adapter removal in Nanopore long reads, and comparison of long read multiple alignements.
