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zervamicin IIB


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  • Norine ID: NOR01092
  • DOI: 10.26097/nor01092
  • Family: zervamicin
  • Synonym(s): zervamicin IIB;
  • Activity: antibiotic
  • Class: peptaibol
  • Formula: C90H139N19O22
  • Monoisotopic mass: 1838.034207227 g/mol
  • Source: norine
  • Contributor (creation): Norine Team [CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France]
  • Entry information:
    • status: curated
    • last modification date: 2018-12-01 by Emma Ricart Altimiras [Swiss Institute of Bioinformatics, SIB]
    • view all entry history
  • Type: linear
  • Number of monomers: 16
  • Smiles: CC[C@H](C)[C@@H](C(=O)N[C@@H](CCC(=O)N)C(=O)N[C@@](C)(CC)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H]([C@@H](C)O)C(=O)NC(C)(C)C(=O)N[C@@H](CC(C)C)C(=O)NC(C)(C)C(=O)N1C[C@@H](C[C@H]1C(=O)N[C@@H](CCC(=O)N)C(=O)NC(C)(C)C(=O)N2C[C@@H](C[C@H]2C(=O)NC(C)(C)C(=O)N3CCC[C@H]3C(=O)N[C@@H](CC4=CC=CC=C4)CO)O)O)NC(=O)[C@H](CC5=CNC6=CC=CC=C65)NC(=O)C

  • Graph inference:



  • Monomeric composition and PDB SEQRES:
    gra
    1
    Ac-Trp
    1 2
    ACE TRP
    2
    Ile
    3
    ILE
    3
    Gln
    4
    GLN
    4
    D-Ival
    5
    DIV
    5
    Ile
    6
    ILE
    6
    Thr
    7
    THR
    7
    Aib
    8
    AIB
    8
    Leu
    9
    LEU
    9
    Aib
    10
    AIB
    10
    4OH-Pro
    11
    HYP
    11
    Gln
    12
    GLN
    12
    Aib
    13
    AIB
    13
    4OH-Pro
    14
    HYP
    14
    Aib
    15
    AIB
    15
    Pro
    16
    PRO
    16
    Pheol
    17
    PHL
  • Graph representation: Ac-Trp,Ile,Gln,D-Ival,Ile,Thr,Aib,Leu,Aib,4OH-Pro,Gln,Aib,4OH-Pro,Aib,Pro,Pheol @1 @0,2 @1,3 @2,4 @3,5 @4,6 @5,7 @6,8 @7,9 @8,10 @9,11 @10,12 @11,13 @12,14 @13,15 @14

  • Atomic structure:
    Chemical structure
  • Emericellopsis salmosynnemata
  • taxid: 118885 (view NCBI taxonomy browser)

  • Links between organisms producing the zervamicin IIB: Emericellopsis salmosynnemata
  • Structures of eleven zervamicin and two emerimicin peptide antibiotics studied by fast atom bombardment mass spectrometry
    Rinehart KL, Cook JC, Pandey RC, Gaudioso LA, Moore ML, Barber M, Sedgwick RD, Bordoli RS, Tyler AN, Green BN, Journal of the American Chemical Society , 1981, 103 (21), pp 6517–6520


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