This page provides tools to analyse nucleic acids sequence: homology search, repeats, multiple sequence alignment.
YASS
Genomic similarity search tool for DNA/RNA sequences in fasta or plain text format. The algorithm uses transition-constrained spaced seeds, and achieves high sensitivity
Magnolia
Program suite to classify family of RNA sequences as protein-coding or noncoding RNA genes by comparative analysis. It also produces a multiple sequence alignment as a byproduct
SToRM
A prototype read mapping software specifically designed for SOLiD or Illumina reads