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avoparcin-beta


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  • Norine ID: NOR00929
  • Family: avoparcin
  • Synonym(s): avoparcin-beta;
  • Activity: antibiotic
  • Class: glycopeptide
  • Formula: C89H101Cl2N9O36
  • Monoisotopic mass: 1941.5726260890003 g/mol
  • Comment: Avoparcin consists of a mixture of several structurally similar glycopeptide analogs, of which alpha and beta avoparcin are the major components. Two bonds of the central Hpg are due to oxidative ring closure reactions.
  • Source: norine
  • Contributor (creation): Norine Team [CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France]
  • Entry information:
    • status: curated
    • last modification date: 2008-10-07 by Norine Team [CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France]
    • view all entry history
  • Type: other
  • Number of monomers: 12
  • Smiles: CC1C(C(CC(O1)OC2C(C(C(OC2OC3=C4C=C5C=C3OC6=C(C=C(C=C6)C(C7C(=O)NC(C8=CC(=CC(=C8C9=C(C=CC(=C9)C(C(=O)N7)NC(=O)C5NC(=O)C(NC(=O)C(C(C1=CC=C(O4)C=C1)OC1C(C(C(C(O1)CO)O)O)O)NC(=O)C(C1=CC=C(C=C1)OC1C(C(C(C(O1)C)O)O)O)NC)C1=CC(=C(C=C1)O)Cl)O)O)O)C(=O)O)OC1CC(C(C(O1)C)O)N)Cl)CO)O)O)N)O

  • Graph inference:



  • Monomeric composition :
    1
    Rha
    2
    NMe-Hpg
    3
    Tyr
    4
    D-Man
    5
    Cl-Hpg
    6
    Hpg
    7
    Ria
    8
    D-Glc
    9
    bOH-Cl-Tyr
    10
    Ria
    11
    Hpg
    12
    Dhpg
  • Graph representation: Rha,NMe-Hpg,Tyr,D-Man,Cl-Hpg,Hpg,Ria,D-Glc,bOH-Cl-Tyr,Ria,Hpg,Dhpg @1 @2,0 @3,4,5,1 @2 @2,5 @4,2,6,8,10 @7,5 @6 @9,5,11,10 @8 @11,5,8 @8,10

  • Atomic structure:
    Chemical structure
  • Streptomyces candidus
  • gram: positive
  • synonyms: Actinomyces candidus
  • taxid: 67283 (view NCBI taxonomy browser)

  • Links between organisms producing the avoparcin-beta: Streptomyces candidus
  • Avoparcin, a new macrocyclic antibiotic chiral run buffer additive for capillary electrophoresis
    Ekborg-Ott KH, Zientara GA, Schneiderheinze JM, Gahm K, Electrophoresis , 1999, Sep,20(12):2438-57.
    pubMed: 10499337


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