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apicidin D3


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  • Norine ID: NOR01111
  • DOI: 10.26097/nor01111
  • Family: apicidin
  • Synonym(s): apicidin D3;
  • Activity: antitumor, toxin
  • Class: peptide
  • Formula: C34H51N5O6
  • Monoisotopic mass: 625.3839343889999 g/mol
  • Source: norine
  • Contributor (creation): Norine Team [CRIStAL (UMR CNRS 9189), ex-LIFL, France, Charles Viollette Institute, ProBioGEM team, Lille, France, University of Lille, France]
  • Entry information:
    • status: putative
    • last modification date: 2018-12-01 by Emma Ricart Altimiras [Swiss Institute of Bioinformatics, SIB]
    • view all entry history
  • Type: cyclic
  • Number of monomers: 4
  • Smiles: CC[C@H](C)[C@H]1C(=O)N2CCCC[C@@H]2C(=O)N[C@H](C(=O)N[C@H](C(=O)N1)CC3=CN(C4=CC=CC=C43)OC)CCCCCCC(C)O

  • Graph inference:



  • Monomeric composition :
    1
    C10:0-OH(9)-NH2(2)
    2
    D-Hpr
    3
    Ile
    4
    OMe-Trp
  • Graph representation: C10:0-OH(9)-NH2(2),D-Hpr,Ile,OMe-Trp @1,3 @0,2 @1,3 @0,2

  • Atomic structure:
  • Chemical structure
    rBAN vizualisation:
  • Fusarium
  • gram:
  • synonyms:
  • taxid: 5506 (view NCBI taxonomy browser)

  • Links between organisms producing the apicidin D3: Fusarium
  • Structure and chemistry of apicidins, a class of novel cyclic tetrapeptides without a terminal alpha-keto epoxide as inhibitors of histone deacetylase with potent antiprotozoal activities
    Singh SB, Zink DL, Liesch JM, Mosley RT, Dombrowski AW, Bills GF, Darkin-Rattray SJ, Schmatz DM, Goetz MA, The Journal of organic chemistry , 2002, Feb 8,67(3):815-25.
    DOI: 10.1021/jo016088w
    pubMed: 11856024


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